Husimi, yuzuru: search on Z-Library

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1

Biophysical connection between evolutionary dynamics and thermodynamics in in vitro evolution

Takuyo Aita, Yuzuru Husimi

Journal:

Journal of Theoretical Biology

Year:

2012

Language:

english

File:

PDF, 364 KB

english, 2012

2

One-Pot Preparation of mRNA/cDNA Display by a Novel and Versatile Puromycin-Linker DNA

Mochizuki, Yuki, Biyani, Manish, Tsuji-Ueno, Sachika, Suzuki, Miho, Nishigaki, Koichi, Husimi, Yuzuru, Nemoto, Naoto

Journal:

ACS Combinatorial Science

Year:

2011

Language:

english

File:

PDF, 3.14 MB

english, 2011

3

3P-076 Twards in vitro autonomous evolution of self-referring in vitro virus displaying an RNA replicase(The 46th Annual Meeting of the Biophysical Society of Japan)

Arai, Hidenao, Kinoshita, Tomoya, Biyani, Manish, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 286 KB

english, 2008

4

Hyperfine structure in melting profile of bacteriophage lambda DNA

Osamu Gotoh, Yuzuru Husimi, Sadato Yabuki, Akiyoshi Wada

Journal:

Year:

1976

Language:

english

File:

PDF, 764 KB

english, 1976

5

Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, II

Takuyo Aita, Shunichi Morinaga, Yuzuru Husimi

Journal:

Bulletin of Mathematical Biology

Year:

2005

Language:

english

File:

PDF, 885 KB

english, 2005

6

Biomolecular information gained throughin vitroevolution

Takuyo Aita, Yuzuru Husimi

Journal:

Biophysical Reviews

Year:

2010

Language:

english

File:

PDF, 759 KB

english, 2010

7

Real-time monitoring of DNA polymerase reactions by a micro ISFET pH sensor

Sakurai, Toshinari., Husimi, Yuzuru.

Journal:

Analytical Chemistry

Year:

1992

Language:

english

File:

PDF, 857 KB

english, 1992

8

Time-domain measurement of dielectric dispersion as a response to pseudorandom noise

Husimi, Yuzuru, Wada, Akiyoshi

Journal:

Review of Scientific Instruments

Year:

1976

Language:

english

File:

PDF, 754 KB

english, 1976

9

1P229 Evolution of promoter in a natural selection-type evolution reactor(Bioinformatics-comparative genomics and molecular evolution,Poster Presentations)

AGENO, Yasuo, YAMADA, Naofumi, HUSIMI, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2007

Language:

english

File:

PDF, 197 KB

english, 2007

10

Multi-line split DNA synthesis: a novel combinatorial method to make high quality peptide libraries

Ichiro Tabuchi, Sayaka Soramoto, Shingo Ueno, Yuzuru Husimi

Journal:

BMC Biotechnology

Year:

2004

Language:

english

File:

PDF, 1.51 MB

english, 2004

11

Protease-sensitive signalling by chemically engineered intramolecular fluorescent resonance energy transfer mutants of green fluorescent protein

Miho Suzuki, Yoichiro Ito, Hannah Elizabeth Savage, Yuzuru Husimi, Kenneth T. Douglas

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

2004

Language:

english

File:

PDF, 559 KB

english, 2004

12

A Novel Mutant of Green Fluorescent Protein with Enhanced Sensitivity for Microanalysis at 488 nm Excitation

Yoichiro Ito, Miho Suzuki, Yuzuru Husimi

Journal:

Biochemical and Biophysical Research Communications

Year:

1999

Language:

english

File:

PDF, 81 KB

english, 1999

13

Optimal terminal sequences for continuous or serial isothermal amplification of dsRNA with norovirus RNA replicase

Arai, Hidenao, Nishigaki, Koichi, Nemoto, Naoto, Suzuki, Miho, Husimi, Yuzuru

Journal:

Year:

2014

Language:

english

File:

PDF, 832 KB

english, 2014

14

SPIE Proceedings [SPIE Biomedical Optics 2003 - San Jose, CA (Saturday 25 January 2003)] Genetically Engineered and Optical Probes for Biomedical Applications - Multipurpose indicator in cells using intramolecular FRET between GFP and chemical compounds

Suzuki, Miho, Ito, Yoichiro, Savage, Hannah E., Husimi, Yuzuru, Douglas, Kenneth T., Savitsky, Alexander P., Bornhop, Darryl J., Raghavachari, Ramesh, Achilefu, Samuel I.

Year:

2003

Language:

english

File:

PDF, 524 KB

english, 2003

15

1P259 In vitro selection of Polymerase Ribozyme-assisting peptides(20. Origin of life & Evolution,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Kumachi, Shigefumi, Husimi, Yuzuru, Nemoto, Naoto

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 694 KB

english, 2014

16

Kinetics of the polymerization reaction of tobacco mosaic virus protein; transient-saturation type polymerization reaction

Hideki Tachibana, Yuzuru Husimi, Akiyoshi Wada

Journal:

Biophysical Chemistry

Year:

1977

Language:

english

File:

PDF, 1.54 MB

english, 1977

17

An efficient ligation method in the making of anin vitrovirus forin vitroprotein evolution

Ichiro Tabuchi, Sayaka Soramoto, Miho Suzuki, Koichi Nishigaki, Naoto Nemoto, Yuzuru Husimi

Journal:

Biological Procedures Online

Year:

2002

Language:

english

File:

PDF, 490 KB

english, 2002

18

An RNA Binding Peptide Consisting of Four Types of Amino Acid by in Vitro Selection Using cDNA Display

Kumachi, Shigefumi, Husimi, Yuzuru, Nemoto, Naoto

Journal:

Year:

2016

Language:

english

File:

PDF, 2.00 MB

english, 2016

19

Stabilized Self-Sustained Sequence Replication against Evolutionary Instability

Yamamoto, Yuji, Komiya, Shouichi, Husimi, Yuzuru

Journal:

Chemistry Letters

Year:

2001

Language:

english

File:

PDF, 79 KB

english, 2001

20

3P102 Protein synthesis on bead using in vitro virus : Can immobilized mRNA enhance the translation and folding of protein?

Biyani, Manish, Husimi, Yuzuru, Nemoto, Naoto

Journal:

Seibutsu Butsuri

Year:

2004

Language:

english

File:

PDF, 222 KB

english, 2004

21

A T-extended vector using a green fluorescent protein as an indicator

Yoichiro Ito, Miho Suzuki, Yuzuru Husimi

Journal:

Year:

2000

Language:

english

File:

PDF, 175 KB

english, 2000

22

Fitness Spectrum Among Random Mutants on Mt. Fuji-Type Fitness Landscape

Takuyo Aita, Yuzuru Husimi

Journal:

Journal of Theoretical Biology

Year:

1996

Language:

english

File:

PDF, 405 KB

english, 1996

23

Quantum Dot FRET Biosensors that Respond to pH, to Proteolytic or Nucleolytic Cleavage, to DNA Synthesis, or to a Multiplexing Combination

Suzuki, Miho, Husimi, Yuzuru, Komatsu, Hirokazu, Suzuki, Koji, Douglas, Kenneth T.

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 523 KB

english, 2008

24

3N1024 Towards in vitro autonomous evolution of self-referring in vitro virus displaying an RNA replicase, 4(Protein : Measurement & Analysis, Origin of life & Evolution,The 49th Annual Meeting of the Biophysical Society of Japan)

Arai, Hidenao, Biyani, Manish, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2011

Language:

english

File:

PDF, 223 KB

english, 2011

25

Gel shift selection of translation enhancer sequences using messenger RNA display

Manish Biyani, Madhu Biyani, Naoto Nemoto, Takanori Ichiki, Koichi Nishigaki, Yuzuru Husimi

Journal:

Analytical Biochemistry

Year:

2011

Language:

english

File:

PDF, 484 KB

english, 2011

26

Characterization of Norovirus RNA replicase forin vitroamplification of RNA

Arai, Hidenao, Nishigaki, Koichi, Nemoto, Naoto, Suzuki, Miho, Husimi, Yuzuru

Journal:

BMC Biotechnology

Year:

2013

Language:

english

File:

PDF, 430 KB

english, 2013

27

Continuous culture of bacteriophage Q-beta using a cellstat with a bubble wall-growth scraper

Husimi, Yuzuru, Keweloh, Hans-Christian

Journal:

Review of Scientific Instruments

Year:

1987

Language:

english

File:

PDF, 579 KB

english, 1987

28

Fine Structure in the Thermal Denaturation of DNA: High Temperature-Resolution Spectrophotometric Studie

Wada, Akiyoshi, Yabuki, Sadato, Husimi, Yuzuru, Brahms, J. G.

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Year:

1980

Language:

english

File:

PDF, 3.51 MB

english, 1980

29

“Thermal Stability” Maps for Several Double-Stranded DNA Fragments of Known Sequence1

UENO, Sizue, TACHIBANA, Hideki, HUSIMI, Yuzuru, WADA, Akiyoshi

Journal:

Journal of Biochemistry

Year:

1978

Language:

english

File:

PDF, 484 KB

english, 1978

30

Thermodynamical interpretation of an adaptive walk on a Mt. Fuji-type fitness landscape: Einstein relation-like formula holds in a stochastic evolution

Takuyo Aita, Yuzuru Husimi

Journal:

Journal of Theoretical Biology

Year:

2003

Language:

english

File:

PDF, 259 KB

english, 2003

31

2P261 A novel dsRNA replication mode was suggested from the in vitro RNA selection using Norovirus RNA replicase(20. Origin of life & Evolution,Poster)

Arai, Hidenao, Nishigaki, Koichi, Nemoto, Naoto, Suzuki, Miho, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 730 KB

english, 2014

32

Adaptive walks by the fittest among finite random mutants on a Mt. Fuji-type fitness landscape II. Effect of small non-additivity

Takuyo Aita, Yuzuru Husimi

Journal:

Journal of Mathematical Biology

Year:

2000

Language:

english

File:

PDF, 315 KB

english, 2000

33

Estimation of statistical binding properties of ligand population during in vitro selection based on population dynamics theory

Aita, Takuyo, Nishigaki, Koichi, Husimi, Yuzuru

Journal:

Mathematical Biosciences

Year:

2014

Language:

english

File:

PDF, 1.69 MB

english, 2014

34

3N1124 Generation of functional peptides consisting of four kinds of amino acids by in vitro selection : An approach to the origin of translation(Protein : Measurement & Analysis, Origin of life & Evolution,The 49th Annual Meeting of the Biophysical Society of Japan)

Kumachi, Shigefumi, Suzuki, Miho, Nishigaki, Koichi, Husimi, Yuzuru, Nemoto, Naoto

Journal:

Seibutsu Butsuri

Year:

2011

Language:

english

File:

PDF, 255 KB

english, 2011

35

2P136 An in vitro display method for evolution of the protein having free C-teminus(32. Evolutionary molecular engineering,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Ueno, Shingo, Arai, Hidenao, Suzuki, Miho, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 153 KB

english, 2006

36

Cooperative elution of oligoadenylic acid in poly U immobilized chromatography

Shozo Okada, Yuzuru Husimi, Sachiko Tanabe, Akiyoshi Wada

Journal:

Year:

1975

Language:

english

File:

PDF, 831 KB

english, 1975

37

Y-ligation: An efficient method for ligating single-stranded DNAs and RNAs with T4 RNA ligase

Koichi Nishigaki, Katsuya Taguchi, Yasunori Kinoshita, Takuyo Aita, Yuzuru Husimi

Journal:

Molecular Diversity

Year:

1998

Language:

english

File:

PDF, 58 KB

english, 1998

38

In vitro virus: Bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro

Naoto Nemoto, Etsuko Miyamoto-Sato, Yuzuru Husimi, Hiroshi Yanagawa

Journal:

Year:

1997

Language:

english

File:

PDF, 464 KB

english, 1997

39

2P137 Efficient genome construction method for a new species of in vitro virus(32. Evolutionary molecular engineering,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Arai, Hidenao, Ueno, Shingo, Suzuki, Miho, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 156 KB

english, 2006

40

Dielectric measurements of solutions of poly-?-benzyl-L-glutamate using a pseudo-random noise dielectric spectrometer

Nakamura, Haruki, Husimi, Yuzuru, Jones, G. Parry, Wada, Akiyoshi

Journal:

Journal of the Chemical Society Faraday Transactions 2

Year:

1977

Language:

english

File:

PDF, 824 KB

english, 1977

41

A Mutant of Green Fluorescent Protein with Enhanced Sensitivity at 488nm Excitation and Its Application

Ito, Yoichiro, Suzuki, Miho, Husimi, Yuzuru

Journal:

Biochemical Society Transactions

Year:

2000

Language:

english

File:

PDF, 131 KB

english, 2000

42

2PT146 Characterization of norovirus RNA replicase in vitro for the autonomous protein evolution using in vitro virus(The 50th Annual Meeting of the Biophysical Society of Japan)

Arai, Hidenao, Biyani, Manish, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2012

Language:

english

File:

PDF, 202 KB

english, 2012

43

2P138 A novel biased mutation assembling method for evolutionary protein engineering(32. Evolutionary molecular engineering,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Suzuki, Takeru, Aita, Takuyo, Futatsugi, Rui, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 156 KB

english, 2006

44

A fitness model with a significant epistatic term : analysis of sequence-fitness relationship for mutants from Biased Mutation Scrambiling.

Aita, Takuyo, Hamamatsu, Norio, Nomiya, Yukiko, Uchiyama, Hidefumi, Shibanaka, Yasuhiko, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2001

File:

PDF, 261 KB

2001

45

1P-235 Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential(Bioinformatics:Structural genomics, The 47th Annual Meeting of the Biophysical Society of Japan)

Aita, Takuyo, Nisigaki, Koichi, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 462 KB

english, 2009

46

1P-072 Versatile techniques in making of a protein Hamming library for the fast systematic directed evolution(Protein:Engineering, The 47th Annual Meeting of the Biophysical Society of Japan)

Miyazawa, Yosuke, Aita, Takuyo, Husimi, Yuzuru

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 237 KB

english, 2009

47

Experimental Rugged Fitness Landscape in Protein Sequence Space

Hayashi, Yuuki, Aita, Takuyo, Toyota, Hitoshi, Husimi, Yuzuru, Urabe, Itaru, Yomo, Tetsuya, Rutherford, Suzannah

Journal:

Year:

2006

Language:

english

File:

PDF, 213 KB

english, 2006

48

Analysis of a local fitness landscape with a model of the rough Mt. Fuji-type landscape: Application to prolyl endopeptidase and thermolysin

Takuyo Aita, Hidefumi Uchiyama, Tetsuya Inaoka, Motowo Nakajima, Toshio Kokubo, Yuzuru Husimi

Journal:

Year:

2000

Language:

english

File:

PDF, 322 KB

english, 2000

49

Period Dependent Selection in Continuous Culture of Viruses in a Periodic Environment

Takuyo Aita, Yuzuru Husimi

Journal:

Journal of Theoretical Biology

Year:

1994

File:

PDF, 417 KB

1994

50

Theory of Evolutionary Molecular Engineering through Simultaneous Accumulation of Advantageous Mutations

TAKUYO AITA, YUZURU HUSIMI

Journal:

Journal of Theoretical Biology

Year:

2000

Language:

english

File:

PDF, 334 KB

english, 2000

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